The Key difference is that Google Webmaster tools is built for webmasters so that they manage and maintain their websites, while Google Analytics can be used by anyone (webmasters, online marketers, SEO, etc) to track the performance of a website.<br /><br />Google Webmaster is also Google specific as it offers data on Google search, while Google Analytics is a tracker that offers information about traffic on your website no matter where is comes from.
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